PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.59WR9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 305aa    MW: 35270.2 Da    PI: 8.3657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.59WR9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.9e-142810914100
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                  + l ++ kf++++gg       + l+ ++g +Wev+   rk++++++++kGW++F +   L++g  ++F+++g+s+    v++f+ks
  Araip.59WR9  28 QSLKISSKFTRTYGGG--LFNPMFLKPPDGTKWEVNW-TRKNDDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQL--DVHIFDKS 109
                  56899********766..4445999************.5899999**************************998777..99999985 PP

2B342.21.4e-132293022499
                  HTT---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  24 eehggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +e+  + e++++l+      +sW+vkl+  ++   +    +l++GW+ F+++ +L  gD++vF+l++ +  +++v++f+k
  Araip.59WR9 229 KEYTDEDEKDVELK---IGEKSWKVKLRRgSN---SsncRYLGGGWSLFADQSELLPGDVCVFELINIHPLQFRVHIFKK 302
                  34433333333333...456*******55444...444589************************98899999****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.70215109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-1816109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-1819116IPR015300DNA-binding pseudobarrel domain
CDDcd100177.70E-1321107No hitNo description
SMARTSM010198.0E-1322109IPR003340B3 DNA binding domain
PfamPF023622.1E-1128108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-15203303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-13204302IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-10208301No hitNo description
PROSITE profilePS5086311.406208303IPR003340B3 DNA binding domain
SMARTSM010191.5E-9208303IPR003340B3 DNA binding domain
PfamPF023624.4E-11229302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASSSQWRGK AIIPVHFSAI IFKKTDLQSL KISSKFTRTY GGGLFNPMFL KPPDGTKWEV  60
NWTRKNDDEV WFEKGWNKFT QNYSLDDGHL ILFTYHGNSQ LDVHIFDKSA SEILYPGLNT  120
TPTTACDDEK NIKLDLMHND DDDDDSIEIL KPCKHKRSML VLVPQPCNKR MKDKKKVAER  180
RSSCSSLNWP KQERAQEVAM NFVSDNPFFT MFITHIHLSH YKAAVPNMKE YTDEDEKDVE  240
LKIGEKSWKV KLRRGSNSSN CRYLGGGWSL FADQSELLPG DVCVFELINI HPLQFRVHIF  300
KKQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174KRMKDKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941762.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein